Showing posts with label substrate. Show all posts
Showing posts with label substrate. Show all posts

Tuesday, 8 April 2014

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How does ph affect enzyme activity?

Enzymes have a more or less narrow optimal pH at which they work, depending on the conditions of their environment. Pepsin for example is active in the stomach which is pretty acidic and has an optimal pH of 2.0, while Trypsin, which is active in the small intestine has an optimal pH around 8.5.
Changes in the pH first affect the form of the protein, hydrogen bonds between the amino acids of the molecule and so on and also the form of the active center of the enzyme. Small changes in pH do little or nothing, then reversible changes occur and finally the enzyme gets irreversibly denatured.
The relationship between enzyme activity and pH always looks like this (the curve can be steeper, if the optimal range is small and broader if the range is wider)
At the optimal pH for the enzyme the conformation of the protein is as it should be (in the ideal state) while this changes when the pH is not optimal. This can lead to improper substrate binding, changes in the active center and so on.
Enzyme kinetics curve

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Monday, 23 December 2013

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Discuss factors affecting the performance of an enzyme.

1. The first thing that could effect the performance of an enzyme is whether or not there is a costly/negligble mutation, such as a point mutation. As you may know, if there is a point mutation, where one nucleotide is exchanged for another, a different amino acid, than expected may be synthesized. The types of amino acids coded by triplets (codons) which consists of 3 bases, determine how a protein, like an enzyme folds. If the enzyme does not fold properly, the enzyme may not function well, or not at all. On the other hand if there is a point mutation where a base change does not change the amino acid, then the enzymatic activity will be normal as expected.

2. Another possibility of course is temperature. With a decrease in temperature, the enzyme will function slower. Whereas with an increase in temperature, the molecular forces that hold the enzyme together (essentially changes the shape or conformation of the enzyme) may be interrupted, break apart, and thus the enzyme has no function.

3. pH is another gimme--enzymes function at both high (basic environments) and low (acidic environments) so this condition depends on what enzyme we are talking about. Regardless, because acids and bases take away and add H+ (protons), this can disrupt the charge of the enzyme, where there will be intermolecular interference, such as that seen when an enzyme is exposed to high temperature (will denature, most likely if the pH change is too drastic).

4. An enzyme's performance will change it there is the a presents of a competitive inhibitor. This means that on the substrate which the enzyme will bind to is actually two active sites. If the substrate target is already bound by another ligand, or enzyme, then the activity of the enzyme of interest will decrease its rate (an enzyme functions best when it can saturate the substrate entirely..this rate of enzymatic activity is called the enzyme's Vmax).

5. Overall concentration of the enzyme. If there is a low concentration of enzyme and a high concentration of substrate, the performance of the enzyme will not be as strong. There will be less filling of the active site and the reaction that the enzyme catalyses will be slower.

6. Overall concentration of the substrate. If there is not enough substrate, the enzyme essentially has nothing to bind to---as a result, the rate of the enzymatic reaction will decrease, as opposed to if there was equal amounts of enzyme and substrate.
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